Use sources_non_forked folder for pathogen path, with sources_non_forked_fallback folder as fallback.

sources_non_forked/ale/ale_linters/coffee/coffee.vim

@@ -1,23 +0,0 @@
-" Author: KabbAmine - https://github.com/KabbAmine
-" Description: Coffee for checking coffee files
-
-function! ale_linters#coffee#coffee#GetExecutable(buffer) abort
-    return ale#path#ResolveLocalPath(
-    \   a:buffer,
-    \   'node_modules/.bin/coffee',
-    \   'coffee'
-    \)
-endfunction
-
-function! ale_linters#coffee#coffee#GetCommand(buffer) abort
-    return ale_linters#coffee#coffee#GetExecutable(a:buffer)
-    \   . ' -cp -s'
-endfunction
-
-call ale#linter#Define('coffee', {
-\   'name': 'coffee',
-\   'executable': function('ale_linters#coffee#coffee#GetExecutable'),
-\   'command': function('ale_linters#coffee#coffee#GetCommand'),
-\   'output_stream': 'stderr',
-\   'callback': 'ale#handlers#gcc#HandleGCCFormat',
-\})

sources_non_forked/ale/ale_linters/coffee/coffeelint.vim

@@ -1,43 +0,0 @@
-" Author: Prashanth Chandra https://github.com/prashcr
-" Description: coffeelint linter for coffeescript files
-
-function! ale_linters#coffee#coffeelint#GetExecutable(buffer) abort
-    return ale#path#ResolveLocalPath(
-    \   a:buffer,
-    \   'node_modules/.bin/coffeelint',
-    \   'coffeelint'
-    \)
-endfunction
-
-function! ale_linters#coffee#coffeelint#GetCommand(buffer) abort
-    return ale_linters#coffee#coffeelint#GetExecutable(a:buffer)
-    \   . ' --stdin --reporter csv'
-endfunction
-
-function! ale_linters#coffee#coffeelint#Handle(buffer, lines) abort
-    " Matches patterns like the following:
-    "
-    " path,lineNumber,lineNumberEnd,level,message
-    " stdin,14,,error,Throwing strings is forbidden
-    "
-    " Note that we currently ignore lineNumberEnd for multiline errors
-    let l:pattern = 'stdin,\(\d\+\),\(\d*\),\(.\{-1,}\),\(.\+\)'
-    let l:output = []
-
-    for l:match in ale#util#GetMatches(a:lines, l:pattern)
-        call add(l:output, {
-        \   'lnum': str2nr(l:match[1]),
-        \   'type': l:match[3] is# 'error' ? 'E' : 'W',
-        \   'text': l:match[4],
-        \})
-    endfor
-
-    return l:output
-endfunction
-
-call ale#linter#Define('coffee', {
-\   'name': 'coffeelint',
-\   'executable': function('ale_linters#coffee#coffeelint#GetExecutable'),
-\   'command': function('ale_linters#coffee#coffeelint#GetCommand'),
-\   'callback': 'ale_linters#coffee#coffeelint#Handle',
-\})